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Sr. Director, Alliance and Program Management

Flagshippioneeringinc

Cambridge, MA USA, US$217k – $275konsite

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About this role

Company Summary

ProFound™ Therapeutics is a biotechnology company discovering novel proteins across the expanded human proteome to unlock transformative drug targets and first-in-class medicines. The company’s proprietary ProFoundry™ Platform integrates state-of-the-art protein detection, validation, and computational technologies to systematically identify and characterize previously unknown proteins and validate their therapeutic potential. This approach has generated a rapidly expanding portfolio of novel targets and programs advancing toward the clinic, along with strategic collaborations with leading pharmaceutical partners. Together, these efforts support the development of breakthrough treatments across a broad range of disease areas. For more information, please visit www.profoundtx.com .

Position Summary

ProFound Therapeutics is seeking a Senior Director, Alliance & Program Management to serve as an operational and strategic partner to the Chief Operating Officer, leadership team, and program teams.

This role has two primary responsibilities: (1) serving as the day-to-day operational leader for ProFound's strategic pharmaceutical collaborations and (2) building the company's portfolio and program management capabilities. The role ensures successful alliance and program execution while developing the governance, planning processes, and operating systems that enable disciplined execution across the company's growing portfolio. This is a highly visible role requiring exceptional judgment, operational rigor, and the ability to influence without authority. The successful candidate will lead day-to-day alliance execution, enable governance, implement practical program management systems, and partner with scientific leadership to translate decisions into disciplined execution and ensure that programs remain aligned on objectives, timelines, budget, risks, and resource needs.

The ideal candidate is an experienced biotechnology operator who combines strategic thinking with hands-on execution. They thrive in a lean, entrepreneurial environment where priorities evolve rapidly and success depends on bringing structure to complexity, building practical solutions, fostering collaboration, and driving accountability across highly matrixed teams.

Key Responsibilities

Alliance Management

• Serve as the primary Alliance Manager and operational leader for ProFound's strategic pharmaceutical collaborations, ensuring successful execution of scientific objectives, governance activities, and contractual commitments.

• Build trusted relationships across partner organizations while coordinating cross-functional scientific, legal, finance, IP, and operational teams to drive alliance execution.

• Lead Joint Steering Committees (JSCs) and other governance forums, ensuring meetings are well prepared, decisions documented, and actions successfully executed.

• Partner with Business Development to help structure new alliances for successful execution.

• Translate collaboration agreements into executable operating plans, proactively managing milestones, deliverables, risks, issues, and partner expectations.

• Monitor alliance health and performance, resolving conflicts constructively and providing executive leadership with clear visibility into key risks and opportunities.

• Build credibility through exceptional execution, proactive communication, sound judgment, and effective stakeholder management.

Program Management

• Build and continuously improve ProFound's portfolio and program management capabilities, including governance, tools, and operating processes.

• Lead integrated program management across discovery and early development programs, ensuring visibility into progress, risks, and resource needs.

• Train and support scientific teams in adopting practical project management tools and consistent execution practices.

• Partner with scientific leadership to implement stage-gate processes, governance frameworks, and portfolio reporting that support timely, high-quality decisions.

• Partner with Finance to integrate program plans, budgets, and decision points, framing up options for timely investment, tradeoff, and resource allocation decisions.

• Facilitate cross-functional program reviews, ensuring alignment, accountability, and effective follow-through on key decisions and actions.

• Foster an operating culture that balances executional discipline with the agility of a growing biotechnology company.

Portfolio Strategy, Planning & Governance

• Partner with executive leadership to drive portfolio prioritization, governance, and strategic investment decisions across pipeline and platform initiatives.

• Support annual strategic planning, Long-Range Planning (LRP), and portfolio planning by coordinating program assumptions, milestones, timelines, and resource inputs.

• Develop executive dashboards and portfolio reporting that improve visibility into organizational priorities, execution, and performance.

• Provide program management support for executive governance meetings and other high-priority cross-functional initiatives.

Qualifications

Experience

• Ph.D. or M.S. in life sciences, or MBA with at least 5 years of direct experience working closely with scientific teams in a biotech or pharmaceutical setting.

• 10-15+ years’ experience in biotech or pharma alliance management, portfolio management, program management, and operational leadership.

• Demonstrated success managing complex external partnerships, including governance, contractual obligations, and relationship management requiring judgement and influence across multiple stakeholders.

• Hands-on experience leading program management across multi-program biotech portfolios, from early discovery through translational development.

• Proven track record of building portfolio management processes, governance models, and project management capabilities within a growing biotechnology company.

• Experience supporting portf

Salary insight

The midpoint of this range ($246k) is about 54% above the median disclosed salary for Boston roles listed on ForgeApply ($160k across 508 jobs).

Based on live postings with disclosed pay on ForgeApply; refreshed daily. Not an estimate of this employer's offer.

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